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Tytuł :
Unravelling the tumour genome: The evolutionary and clinical impacts of structural variants in tumourigenesis.
Autorzy :
Hamdan A; MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, UK.; Cancer Research UK Edinburgh Centre, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, UK.
Ewing A; MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, UK.; Cancer Research UK Edinburgh Centre, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, UK.
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Źródło :
The Journal of pathology [J Pathol] 2022 Jul; Vol. 257 (4), pp. 479-493. Date of Electronic Publication: 2022 Apr 28.
Typ publikacji :
Journal Article; Review; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome*
Neoplasms*/genetics
Carcinogenesis/genetics ; Genome, Human/genetics ; Genomics/methods ; Humans ; Whole Genome Sequencing/methods
Czasopismo naukowe
Tytuł :
Plastome structure of 8 Calanthe s.l. species (Orchidaceae): comparative genomics, phylogenetic analysis.
Autorzy :
Nanjala C; CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China.; University of Chinese Academy of Sciences, Beijing, 100049, China.; Sino-Africa Joint Research Center, Chinese Academy of Sciences, Wuhan, 430074, China.
Wanga VO; CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China.; University of Chinese Academy of Sciences, Beijing, 100049, China.; Sino-Africa Joint Research Center, Chinese Academy of Sciences, Wuhan, 430074, China.
Odago W; CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China.; University of Chinese Academy of Sciences, Beijing, 100049, China.; Sino-Africa Joint Research Center, Chinese Academy of Sciences, Wuhan, 430074, China.
Mutinda ES; CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China.; University of Chinese Academy of Sciences, Beijing, 100049, China.; Sino-Africa Joint Research Center, Chinese Academy of Sciences, Wuhan, 430074, China.
Waswa EN; CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China.; University of Chinese Academy of Sciences, Beijing, 100049, China.; Sino-Africa Joint Research Center, Chinese Academy of Sciences, Wuhan, 430074, China.
Oulo MA; CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China.; University of Chinese Academy of Sciences, Beijing, 100049, China.; Sino-Africa Joint Research Center, Chinese Academy of Sciences, Wuhan, 430074, China.
Mkala EM; CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China.; University of Chinese Academy of Sciences, Beijing, 100049, China.; Sino-Africa Joint Research Center, Chinese Academy of Sciences, Wuhan, 430074, China.
Kuja J; Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Yang JX; CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China.; University of Chinese Academy of Sciences, Beijing, 100049, China.; Sino-Africa Joint Research Center, Chinese Academy of Sciences, Wuhan, 430074, China.
Dong X; CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China.; University of Chinese Academy of Sciences, Beijing, 100049, China.; Sino-Africa Joint Research Center, Chinese Academy of Sciences, Wuhan, 430074, China.
Hu GW; CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China. .; University of Chinese Academy of Sciences, Beijing, 100049, China. .; Sino-Africa Joint Research Center, Chinese Academy of Sciences, Wuhan, 430074, China. .
Wang QF; CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China.; University of Chinese Academy of Sciences, Beijing, 100049, China.; Sino-Africa Joint Research Center, Chinese Academy of Sciences, Wuhan, 430074, China.
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Źródło :
BMC plant biology [BMC Plant Biol] 2022 Aug 03; Vol. 22 (1), pp. 387. Date of Electronic Publication: 2022 Aug 03.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Chloroplast*
Orchidaceae*/genetics
Gene Order ; Genome ; Genomics ; Phylogeny
Czasopismo naukowe
Tytuł :
Whole-genome sequencing reveals host factors underlying critical COVID-19.
Autorzy :
Kousathanas A; Genomics England, London, UK.
Pairo-Castineira E; Roslin Institute, University of Edinburgh, Edinburgh, UK.; MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Western General Hospital, Edinburgh, UK.
Rawlik K; Roslin Institute, University of Edinburgh, Edinburgh, UK.
Stuckey A; Genomics England, London, UK.
Odhams CA; Genomics England, London, UK.
Walker S; Genomics England, London, UK.
Russell CD; Roslin Institute, University of Edinburgh, Edinburgh, UK.; Centre for Inflammation Research, The Queen's Medical Research Institute, University of Edinburgh, Edinburgh, UK.
Malinauskas T; Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.
Wu Y; Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, Australia.
Millar J; Roslin Institute, University of Edinburgh, Edinburgh, UK.
Shen X; Biostatistics Group, Greater Bay Area Institute of Precision Medicine (Guangzhou), Fudan University, Guangzhou, China.; Centre for Global Health Research, Usher Institute of Population Health Sciences and Informatics, Edinburgh, UK.
Elliott KS; Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.
Griffiths F; Roslin Institute, University of Edinburgh, Edinburgh, UK.
Oosthuyzen W; Roslin Institute, University of Edinburgh, Edinburgh, UK.
Morrice K; Edinburgh Clinical Research Facility, Western General Hospital, University of Edinburgh, Edinburgh, UK.
Keating S; Intensive Care Unit, Royal Infirmary of Edinburgh, Edinburgh, UK.
Wang B; Roslin Institute, University of Edinburgh, Edinburgh, UK.
Rhodes D; Genomics England, London, UK.
Klaric L; MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Western General Hospital, Edinburgh, UK.
Zechner M; Roslin Institute, University of Edinburgh, Edinburgh, UK.
Parkinson N; Roslin Institute, University of Edinburgh, Edinburgh, UK.
Siddiq A; Genomics England, London, UK.
Goddard P; Genomics England, London, UK.
Donovan S; Genomics England, London, UK.
Maslove D; Department of Critical Care Medicine, Queen's University and Kingston Health Sciences Centre, Kingston, Ontario, Canada.
Nichol A; Clinical Research Centre at St Vincent's University Hospital, University College Dublin, Dublin, Ireland.
Semple MG; NIHR Health Protection Research Unit for Emerging and Zoonotic Infections, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK.; Respiratory Medicine and Institute in the Park, Alder Hey Children's Hospital and University of Liverpool, Liverpool, UK.
Zainy T; Genomics England, London, UK.
Maleady-Crowe F; Genomics England, London, UK.
Todd L; Genomics England, London, UK.
Salehi S; Genomics England, London, UK.
Knight J; Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.
Elgar G; Genomics England, London, UK.
Chan G; Genomics England, London, UK.
Arumugam P; Genomics England, London, UK.
Patch C; Genomics England, London, UK.
Rendon A; Genomics England, London, UK.
Bentley D; Illumina Cambridge, Great Abington, UK.
Kingsley C; Illumina Cambridge, Great Abington, UK.
Kosmicki JA; Regeneron Genetics Center, Tarrytown, NY, USA.
Horowitz JE; Regeneron Genetics Center, Tarrytown, NY, USA.
Baras A; Regeneron Genetics Center, Tarrytown, NY, USA.
Abecasis GR; Regeneron Genetics Center, Tarrytown, NY, USA.
Ferreira MAR; Regeneron Genetics Center, Tarrytown, NY, USA.
Justice A; Geisinger, Danville, PA, USA.
Mirshahi T; Geisinger, Danville, PA, USA.
Oetjens M; Geisinger, Danville, PA, USA.
Rader DJ; Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Ritchie MD; Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Verma A; Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Fowler TA; Genomics England, London, UK.; Test and Trace, the Health Security Agency, Department of Health and Social Care, London, UK.
Shankar-Hari M; Department of Intensive Care Medicine, Guy's and St Thomas' NHS Foundation Trust, London, UK.
Summers C; Department of Medicine, University of Cambridge, Cambridge, UK.
Hinds C; William Harvey Research Institute, Barts and the London School of Medicine and Dentistry, Queen Mary University of London, London, UK.
Horby P; Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, UK.
Ling L; Department of Anaesthesia and Intensive Care, The Chinese University of Hong Kong, Prince of Wales Hospital, Hong Kong, China.
McAuley D; Wellcome-Wolfson Institute for Experimental Medicine, Queen's University Belfast, Belfast, UK.; Department of Intensive Care Medicine, Royal Victoria Hospital, Belfast, UK.
Montgomery H; UCL Centre for Human Health and Performance, London, UK.
Openshaw PJM; National Heart and Lung Institute, Imperial College London, London, UK.; Imperial College Healthcare NHS Trust: London, London, UK.
Elliott P; Imperial College, London, UK.
Walsh T; Intensive Care Unit, Royal Infirmary of Edinburgh, Edinburgh, UK.
Tenesa A; Roslin Institute, University of Edinburgh, Edinburgh, UK.; MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Western General Hospital, Edinburgh, UK.; Centre for Global Health Research, Usher Institute of Population Health Sciences and Informatics, Edinburgh, UK.
Fawkes A; Edinburgh Clinical Research Facility, Western General Hospital, University of Edinburgh, Edinburgh, UK.
Murphy L; Edinburgh Clinical Research Facility, Western General Hospital, University of Edinburgh, Edinburgh, UK.
Rowan K; Intensive Care National Audit and Research Centre, London, UK.
Ponting CP; MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Western General Hospital, Edinburgh, UK.
Vitart V; MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Western General Hospital, Edinburgh, UK.
Wilson JF; MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Western General Hospital, Edinburgh, UK.; Centre for Global Health Research, Usher Institute of Population Health Sciences and Informatics, Edinburgh, UK.
Yang J; School of Life Sciences, Westlake University, Hangzhou, China.; Westlake Laboratory of Life Sciences and Biomedicine, Hangzhou, China.
Bretherick AD; MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Western General Hospital, Edinburgh, UK.
Scott RH; Genomics England, London, UK.; Great Ormond Street Hospital, London, UK.
Hendry SC; Roslin Institute, University of Edinburgh, Edinburgh, UK.
Moutsianas L; Genomics England, London, UK.
Law A; Roslin Institute, University of Edinburgh, Edinburgh, UK.
Caulfield MJ; Genomics England, London, UK. .; William Harvey Research Institute, Queen Mary University of London, London, UK. .
Baillie JK; Roslin Institute, University of Edinburgh, Edinburgh, UK. .; MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Western General Hospital, Edinburgh, UK. .; Centre for Inflammation Research, The Queen's Medical Research Institute, University of Edinburgh, Edinburgh, UK. .; Intensive Care Unit, Royal Infirmary of Edinburgh, Edinburgh, UK. .
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Corporate Authors :
GenOMICC investigators
23andMe investigators
COVID-19 Human Genetics Initiative
Źródło :
Nature [Nature] 2022 Jul; Vol. 607 (7917), pp. 97-103. Date of Electronic Publication: 2022 Mar 07.
Typ publikacji :
Journal Article
MeSH Terms :
COVID-19*/genetics
COVID-19*/mortality
COVID-19*/pathology
COVID-19*/virology
Critical Illness*/mortality
Genome, Human*/genetics
Host-Pathogen Interactions*/genetics
Whole Genome Sequencing*
ATP-Binding Cassette Transporters ; Cell Adhesion Molecules ; Critical Care ; E-Selectin ; Factor VIII ; Fucosyltransferases ; Genome-Wide Association Study ; Humans ; Interleukin-10 Receptor beta Subunit ; Lectins, C-Type ; Mucin-1 ; Nerve Tissue Proteins ; Phospholipid Transfer Proteins ; Receptors, Cell Surface ; Repressor Proteins ; SARS-CoV-2/pathogenicity
Czasopismo naukowe
Tytuł :
A 13.42-kb tandem duplication at the ASIP locus is strongly associated with the depigmentation phenotype of non-classic Swiss markings in goats.
Autorzy :
Guo J; College of Animal Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China.
Sun X; College of Animal Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China.
Mao A; College of Animal Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China.
Liu H; College of Animal Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China.
Zhan S; College of Animal Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China.
Li L; College of Animal Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China.
Zhong T; College of Animal Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China.
Wang L; College of Animal Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China.
Cao J; College of Animal Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China.
Liu GE; Animal Genomics and Improvement Laboratory, BARC, Agricultural Research Service, USDA, Beltsville, MD, 20705, USA. .
Zhang H; College of Animal Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China. .
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Źródło :
BMC genomics [BMC Genomics] 2022 Jun 13; Vol. 23 (1), pp. 437. Date of Electronic Publication: 2022 Jun 13.
Typ publikacji :
Journal Article
MeSH Terms :
Genome-Wide Association Study*
Goats*/genetics
Animals ; Genome ; Phenotype
Czasopismo naukowe
Tytuł :
Genetic landscape of human mitochondrial genome using whole-genome sequencing.
Autorzy :
Wang Y; National Clinical Research Center for Geriatric Disorders, Department of Geriatrics, Xiangya Hospital, Central South University, Changsha 410008, China.; Center for Medical Genetics & Hunan Key Laboratory of Medical Genetics, School of Life Sciences, Central South University, Changsha 410008, China.
Zhao G; National Clinical Research Center for Geriatric Disorders, Department of Geriatrics, Xiangya Hospital, Central South University, Changsha 410008, China.; Department of Neurology, Xiangya Hospital, Central South University, Changsha 410008, China.
Fang Z; National Clinical Research Center for Geriatric Disorders, Department of Geriatrics, Xiangya Hospital, Central South University, Changsha 410008, China.; Center for Medical Genetics & Hunan Key Laboratory of Medical Genetics, School of Life Sciences, Central South University, Changsha 410008, China.
Pan H; National Clinical Research Center for Geriatric Disorders, Department of Geriatrics, Xiangya Hospital, Central South University, Changsha 410008, China.; Department of Neurology, Xiangya Hospital, Central South University, Changsha 410008, China.
Zhao Y; National Clinical Research Center for Geriatric Disorders, Department of Geriatrics, Xiangya Hospital, Central South University, Changsha 410008, China.; Department of Neurology, Xiangya Hospital, Central South University, Changsha 410008, China.
Wang Y; National Clinical Research Center for Geriatric Disorders, Department of Geriatrics, Xiangya Hospital, Central South University, Changsha 410008, China.; Department of Neurology, Xiangya Hospital, Central South University, Changsha 410008, China.
Zhou X; National Clinical Research Center for Geriatric Disorders, Department of Geriatrics, Xiangya Hospital, Central South University, Changsha 410008, China.; Department of Neurology, Xiangya Hospital, Central South University, Changsha 410008, China.
Wang X; National Clinical Research Center for Geriatric Disorders, Department of Geriatrics, Xiangya Hospital, Central South University, Changsha 410008, China.; Center for Medical Genetics & Hunan Key Laboratory of Medical Genetics, School of Life Sciences, Central South University, Changsha 410008, China.
Luo T; National Clinical Research Center for Geriatric Disorders, Department of Geriatrics, Xiangya Hospital, Central South University, Changsha 410008, China.; Center for Medical Genetics & Hunan Key Laboratory of Medical Genetics, School of Life Sciences, Central South University, Changsha 410008, China.
Zhang Y; National Clinical Research Center for Geriatric Disorders, Department of Geriatrics, Xiangya Hospital, Central South University, Changsha 410008, China.; Department of Neurology, Xiangya Hospital, Central South University, Changsha 410008, China.
Wang Z; National Clinical Research Center for Geriatric Disorders, Department of Geriatrics, Xiangya Hospital, Central South University, Changsha 410008, China.; Department of Neurology, Xiangya Hospital, Central South University, Changsha 410008, China.
Chen Q; National Clinical Research Center for Geriatric Disorders, Department of Geriatrics, Xiangya Hospital, Central South University, Changsha 410008, China.; Department of Neurology, Xiangya Hospital, Central South University, Changsha 410008, China.
Dong L; National Clinical Research Center for Geriatric Disorders, Department of Geriatrics, Xiangya Hospital, Central South University, Changsha 410008, China.; Center for Medical Genetics & Hunan Key Laboratory of Medical Genetics, School of Life Sciences, Central South University, Changsha 410008, China.
Huang Y; National Clinical Research Center for Geriatric Disorders, Department of Geriatrics, Xiangya Hospital, Central South University, Changsha 410008, China.; Department of Neurology, Xiangya Hospital, Central South University, Changsha 410008, China.
Zhou Q; National Clinical Research Center for Geriatric Disorders, Department of Geriatrics, Xiangya Hospital, Central South University, Changsha 410008, China.; Department of Neurology, Xiangya Hospital, Central South University, Changsha 410008, China.
Xia L; Center for Medical Genetics & Hunan Key Laboratory of Medical Genetics, School of Life Sciences, Central South University, Changsha 410008, China.
Li B; National Clinical Research Center for Geriatric Disorders, Department of Geriatrics, Xiangya Hospital, Central South University, Changsha 410008, China.; Department of Neurology, Xiangya Hospital, Central South University, Changsha 410008, China.
Guo J; National Clinical Research Center for Geriatric Disorders, Department of Geriatrics, Xiangya Hospital, Central South University, Changsha 410008, China.; Department of Neurology, Xiangya Hospital, Central South University, Changsha 410008, China.
Xia K; Center for Medical Genetics & Hunan Key Laboratory of Medical Genetics, School of Life Sciences, Central South University, Changsha 410008, China.
Tang B; National Clinical Research Center for Geriatric Disorders, Department of Geriatrics, Xiangya Hospital, Central South University, Changsha 410008, China.; Department of Neurology, Xiangya Hospital, Central South University, Changsha 410008, China.
Li J; National Clinical Research Center for Geriatric Disorders, Department of Geriatrics, Xiangya Hospital, Central South University, Changsha 410008, China.; Center for Medical Genetics & Hunan Key Laboratory of Medical Genetics, School of Life Sciences, Central South University, Changsha 410008, China.; Department of Neurology, Xiangya Hospital, Central South University, Changsha 410008, China.
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Źródło :
Human molecular genetics [Hum Mol Genet] 2022 Jun 04; Vol. 31 (11), pp. 1747-1761.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Mitochondrial*/genetics
DNA, Mitochondrial/genetics ; Female ; Genome, Human/genetics ; Humans ; Mitochondria/genetics ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
Whole genome sequencing of spotted stem borer, Chilo partellus, reveals multiple genes encoding enzymes for detoxification of insecticides.
Autorzy :
Dhillon MK; Division of Entomology, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India.
Jaba J; International Crops Research Institute for the Semi-Arid Tropics, Patancheru, Hyderabad, 502324, Telangana, India.
Mishra P; Centre for Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, 110012, India.
Iquebal MA; Centre for Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, 110012, India.
Jaiswal S; Centre for Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, 110012, India.
Tanwar AK; Division of Entomology, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India.
Bharat N; International Crops Research Institute for the Semi-Arid Tropics, Patancheru, Hyderabad, 502324, Telangana, India.
Arora N; International Crops Research Institute for the Semi-Arid Tropics, Patancheru, Hyderabad, 502324, Telangana, India.
Mishra SP; International Crops Research Institute for the Semi-Arid Tropics, Patancheru, Hyderabad, 502324, Telangana, India.
Gogineni SP; ICAR-Indian Institute of Millets Research, Rajendranagar, Hyderabad, 500030, Telangana, India.
Hasan F; Division of Entomology, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India.
Rai A; Centre for Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, 110012, India.
Kumar D; Centre for Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, 110012, India. .; Department of Biotechnology, School of Interdisciplinary and Applied Sciences, Central University of Haryana, Mahendergarh, 123031, Haryana, India. .
Sharma HC; International Crops Research Institute for the Semi-Arid Tropics, Patancheru, Hyderabad, 502324, Telangana, India.
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Źródło :
Functional & integrative genomics [Funct Integr Genomics] 2022 Aug; Vol. 22 (4), pp. 611-624. Date of Electronic Publication: 2022 Apr 15.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Insect*
Insecticides*/toxicity
Moths*/drug effects
Moths*/genetics
Acetylcholinesterase/genetics ; Animals ; Edible Grain ; Whole Genome Sequencing ; Zea mays
Czasopismo naukowe
Tytuł :
Detecting genetic epistasis by differential departure from independence.
Autorzy :
Sharma R; Department of Computer Science, New Mexico State University, Las Cruces, NM, USA.
Sadeghian Tehrani Z; MS Program in Bioinformatics, Department of Computer Science, New Mexico State University, Las Cruces, NM, USA.; BASF Corporation, Morrisville, NC, USA.
Kumar S; Department of Computer Science, New Mexico State University, Las Cruces, NM, USA.
Song M; Department of Computer Science, New Mexico State University, Las Cruces, NM, USA. .; Molecular Biology and Interdisciplinary Life Sciences Graduate Program, New Mexico State University, Las Cruces, NM, USA. .
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Źródło :
Molecular genetics and genomics : MGG [Mol Genet Genomics] 2022 Jul; Vol. 297 (4), pp. 911-924. Date of Electronic Publication: 2022 May 23.
Typ publikacji :
Journal Article
MeSH Terms :
Epistasis, Genetic*
Genome-Wide Association Study*
Genome ; Genomics/methods ; Polymorphism, Single Nucleotide/genetics
Czasopismo naukowe
Tytuł :
Meta-imputation: An efficient method to combine genotype data after imputation with multiple reference panels.
Autorzy :
Yu K; Department of Biostatistics, University of Michigan, Ann Arbor, MI 48105, USA. Electronic address: .
Das S; Department of Biostatistics, University of Michigan, Ann Arbor, MI 48105, USA; 23andMe, Sunnyvale, CA 94086, USA.
LeFaive J; Department of Biostatistics, University of Michigan, Ann Arbor, MI 48105, USA.
Kwong A; Department of Biostatistics, University of Michigan, Ann Arbor, MI 48105, USA.
Pleiness J; Department of Biostatistics, University of Michigan, Ann Arbor, MI 48105, USA.
Forer L; Institute of Genetic Epidemiology, Department of Genetics and Pharmacology, Medical University of Innsbruck, 6020 Innsbruck, Austria.
Schönherr S; Institute of Genetic Epidemiology, Department of Genetics and Pharmacology, Medical University of Innsbruck, 6020 Innsbruck, Austria.
Fuchsberger C; Department of Biostatistics, University of Michigan, Ann Arbor, MI 48105, USA; Institute of Genetic Epidemiology, Department of Genetics and Pharmacology, Medical University of Innsbruck, 6020 Innsbruck, Austria; Institute for Biomedicine, Eurac Research, 39100 Bolzano/Bozen, Italy.
Smith AV; Department of Biostatistics, University of Michigan, Ann Arbor, MI 48105, USA.
Abecasis GR; Department of Biostatistics, University of Michigan, Ann Arbor, MI 48105, USA; Regeneron Pharmaceuticals Inc., Tarrytown, NY 10591, USA.
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Źródło :
American journal of human genetics [Am J Hum Genet] 2022 Jun 02; Vol. 109 (6), pp. 1007-1015. Date of Electronic Publication: 2022 May 03.
Typ publikacji :
Journal Article; Meta-Analysis; Research Support, N.I.H., Extramural
MeSH Terms :
Genome-Wide Association Study*/methods
Polymorphism, Single Nucleotide*/genetics
Genome ; Genotype ; Humans ; Research Design
Czasopismo naukowe
Tytuł :
Comparing the whole genome methylation landscape of dairy calf blood cells revealed intergenerational inheritance of the maternal metabolism.
Autorzy :
Zhang Y; Centre de Recherche en Reproduction, Développement et Santé Intergénérationnelle, Faculté des Sciences de l'Agriculture et de l'Alimentation, Département des Sciences Animales, Pavillon INAF, Université Laval, Québec, Québec, Canada.
Chaput C; Centre de Recherche en Reproduction, Développement et Santé Intergénérationnelle, Faculté des Sciences de l'Agriculture et de l'Alimentation, Département des Sciences Animales, Pavillon INAF, Université Laval, Québec, Québec, Canada.
Fournier E; Centre de Recherche en Reproduction, Développement et Santé Intergénérationnelle, Faculté des Sciences de l'Agriculture et de l'Alimentation, Département des Sciences Animales, Pavillon INAF, Université Laval, Québec, Québec, Canada.
Prunier J; Centre de Recherche en Reproduction, Développement et Santé Intergénérationnelle, Faculté des Sciences de l'Agriculture et de l'Alimentation, Département des Sciences Animales, Pavillon INAF, Université Laval, Québec, Québec, Canada.
Sirard MA; Centre de Recherche en Reproduction, Développement et Santé Intergénérationnelle, Faculté des Sciences de l'Agriculture et de l'Alimentation, Département des Sciences Animales, Pavillon INAF, Université Laval, Québec, Québec, Canada.
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Źródło :
Epigenetics [Epigenetics] 2022 Jun-Jul; Vol. 17 (7), pp. 705-714. Date of Electronic Publication: 2021 Jul 24.
Typ publikacji :
Journal Article
MeSH Terms :
DNA Methylation*
Genome*
Animals ; Blood Cells ; Cattle/genetics ; Epigenesis, Genetic ; Female ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes.
Autorzy :
Perez-Sepulveda BM; Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool, Liverpool, UK. .
Heavens D; Earlham Institute, Norwich Research Park, Norwich, UK.
Pulford CV; Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool, Liverpool, UK.
Predeus AV; Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool, Liverpool, UK.
Low R; Earlham Institute, Norwich Research Park, Norwich, UK.
Webster H; Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool, Liverpool, UK.
Dykes GF; Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool, Liverpool, UK.
Schudoma C; Earlham Institute, Norwich Research Park, Norwich, UK.
Rowe W; Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool, Liverpool, UK.; University of Birmingham, Birmingham, UK.
Lipscombe J; Earlham Institute, Norwich Research Park, Norwich, UK.
Watkins C; Earlham Institute, Norwich Research Park, Norwich, UK.
Kumwenda B; Kamuzu University of Health Sciences, Blantyre, Malawi.
Shearer N; Earlham Institute, Norwich Research Park, Norwich, UK.
Costigan K; Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool, Liverpool, UK.
Baker KS; Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool, Liverpool, UK.
Feasey NA; Liverpool School of Tropical Medicine, Pembroke Place, Liverpool, UK.; Malawi-Liverpool-Wellcome Programme, Blantyre, Malawi.
Hinton JCD; Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool, Liverpool, UK. .
Hall N; Earlham Institute, Norwich Research Park, Norwich, UK. .; School of Biological Sciences, University of East Anglia, Norwich, UK. .; Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia. .
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Corporate Authors :
10KSG consortium
Źródło :
Genome biology [Genome Biol] 2021 Dec 21; Vol. 22 (1), pp. 349. Date of Electronic Publication: 2021 Dec 21.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Bacterial*
Whole Genome Sequencing/*methods
DNA, Bacterial/isolation & purification ; Genome ; Humans ; Salmonella enterica/genetics ; Whole Genome Sequencing/economics
Czasopismo naukowe
Tytuł :
GAWMerge expands GWAS sample size and diversity by combining array-based genotyping and whole-genome sequencing.
Autorzy :
Mathur R; GenOmics, Bioinformatics, and Translational Research Center, RTI International, Research Triangle Park, NC, USA.
Fang F; GenOmics, Bioinformatics, and Translational Research Center, RTI International, Research Triangle Park, NC, USA.
Gaddis N; GenOmics, Bioinformatics, and Translational Research Center, RTI International, Research Triangle Park, NC, USA.
Hancock DB; GenOmics, Bioinformatics, and Translational Research Center, RTI International, Research Triangle Park, NC, USA.
Cho MH; Channing Division of Network Medicine, Brigham and Women's Hospital, Boston, MA, USA.; Division of Pulmonary and Critical Care Medicine, Brigham and Women's Hospital, Boston, MA, USA.
Hokanson JE; Department of Epidemiology, Colorado School of Public Health, University of Colorado Denver, Aurora, CO, USA.
Bierut LJ; Department of Psychiatry, Washington University, St. Louis, MO, USA.
Lutz SM; PRecisiOn Medicine Translational Research (PROMoTeR) Center, Department of Population Medicine, Harvard Medical School and Harvard Pilgrim Health Care, Boston, MA, USA.
Young K; Department of Epidemiology, Colorado School of Public Health, University of Colorado Denver, Aurora, CO, USA.
Smith AV; Center for Statistical Genetics, University of Michigan, Ann Arbor, MI, USA.; Department of Biostatistics, University of Michigan, Ann Arbor, MI, USA.
Silverman EK; Channing Division of Network Medicine, Brigham and Women's Hospital, Boston, MA, USA.; Division of Pulmonary and Critical Care Medicine, Brigham and Women's Hospital, Boston, MA, USA.
Page GP; GenOmics, Bioinformatics, and Translational Research Center, RTI International, Research Triangle Park, NC, USA.; Fellow Program, RTI International, Research Triangle Park, NC, USA.
Johnson EO; GenOmics, Bioinformatics, and Translational Research Center, RTI International, Research Triangle Park, NC, USA. .; Fellow Program, RTI International, Research Triangle Park, NC, USA. .
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Corporate Authors :
NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium
Źródło :
Communications biology [Commun Biol] 2022 Aug 11; Vol. 5 (1), pp. 806. Date of Electronic Publication: 2022 Aug 11.
Typ publikacji :
Journal Article
MeSH Terms :
Genome-Wide Association Study*/methods
Genotype ; Phenotype ; Sample Size ; Whole Genome Sequencing/methods
Czasopismo naukowe
Tytuł :
Assessing putative bias in prediction of anti-microbial resistance from real-world genotyping data under explicit causal assumptions.
Autorzy :
Prosperi M; Department of Epidemiology, University of Florida, Gainesville 32610, FL, USA.
Boucher C; Department of Computer Science and Information and Engineering, University of Florida, Gainesville 32611, FL, USA.
Bian J; Department of Health Outcomes and Biomedical Informatics, University of Florida, Gainesville 32610, FL, USA.
Marini S; Department of Epidemiology, University of Florida, Gainesville 32610, FL, USA. Electronic address: .
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Źródło :
Artificial intelligence in medicine [Artif Intell Med] 2022 Aug; Vol. 130, pp. 102326. Date of Electronic Publication: 2022 Jun 03.
Typ publikacji :
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural
MeSH Terms :
Anti-Bacterial Agents*/pharmacology
Genome, Bacterial*
Drug Resistance, Bacterial/genetics ; Genotype ; Microbial Sensitivity Tests ; Whole Genome Sequencing/methods
Czasopismo naukowe
Tytuł :
Genome-Wide Causation Studies of Complex Diseases.
Autorzy :
Jiao R; Department of Biostatistics and Data Science, School of Public Health, The University of Texas Health Science Center at Houston, Houston, Texas, USA.
Chen X; Department of Psychology, Nevada Institute of Personalized Medicine, University of Nevada, Las Vegas, Nevada, USA.
Boerwinkle E; Department of Epidemiology, Human Genetics and Environmental Sciences, School of Public Health, The University of Texas Health Science Center at Houston, Houston, Texas, USA.
Xiong M; Department of Biostatistics and Data Science, School of Public Health, The University of Texas Health Science Center at Houston, Houston, Texas, USA.
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Źródło :
Journal of computational biology : a journal of computational molecular cell biology [J Comput Biol] 2022 Aug; Vol. 29 (8), pp. 908-931. Date of Electronic Publication: 2022 Apr 22.
Typ publikacji :
Journal Article
MeSH Terms :
Genome-Wide Association Study*/methods
Schizophrenia*/genetics
Computer Simulation ; Genome ; Humans ; Linkage Disequilibrium ; Polymorphism, Single Nucleotide
Czasopismo naukowe
Tytuł :
fcfdr: an R package to leverage continuous and binary functional genomic data in GWAS.
Autorzy :
Hutchinson A; MRC Biostatistics Unit, University of Cambridge, Cambridge, UK.
Liley J; MRC Human Genetics Unit, University of Edinburgh, Edinburgh, UK.; The Alan Turing Institute, London, UK.
Wallace C; MRC Biostatistics Unit, University of Cambridge, Cambridge, UK. .; Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge, Cambridge, UK. .; Department of Medicine, University of Cambridge, Cambridge, UK. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2022 Jul 30; Vol. 23 (1), pp. 310. Date of Electronic Publication: 2022 Jul 30.
Typ publikacji :
Journal Article
MeSH Terms :
Diabetes Mellitus, Type 1*/genetics
Genome-Wide Association Study*/methods
Genome ; Genomics/methods ; Humans ; Polymorphism, Single Nucleotide
Czasopismo naukowe
Tytuł :
Comparing heritability estimators under alternative structures of linkage disequilibrium.
Autorzy :
Min A; Department of Statistics, University of Washington, Seattle, WA 98195, USA.
Thompson E; Department of Statistics, University of Washington, Seattle, WA 98195, USA.
Basu S; Division of Biostatistics, University of Minnesota, Minneapolis, MN 55455, USA.
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Źródło :
G3 (Bethesda, Md.) [G3 (Bethesda)] 2022 Jul 29; Vol. 12 (8).
Typ publikacji :
Journal Article
MeSH Terms :
Genome-Wide Association Study*/methods
Polymorphism, Single Nucleotide*
Genome ; Humans ; Linkage Disequilibrium ; Models, Genetic ; Phenotype
Czasopismo naukowe
Tytuł :
PHARP: a pig haplotype reference panel for genotype imputation.
Autorzy :
Wang Z; College of Animal Sciences, Zhejiang University, Hangzhou, 310058, Zhejiang, China.
Zhang Z; College of Animal Sciences, Zhejiang University, Hangzhou, 310058, Zhejiang, China.
Chen Z; College of Animal Sciences, Zhejiang University, Hangzhou, 310058, Zhejiang, China.
Sun J; College of Animal Sciences, Zhejiang University, Hangzhou, 310058, Zhejiang, China.
Cao C; College of Animal Sciences, Zhejiang University, Hangzhou, 310058, Zhejiang, China.
Wu F; College of Animal Sciences, Zhejiang University, Hangzhou, 310058, Zhejiang, China.
Xu Z; Hubei Key Laboratory of Animal Embryo and Molecular Breeding, Institute of Animal Husbandry and Veterinary, Hubei Provincial Academy of Agricultural Sciences, Wuhan, 430064, China.
Zhao W; Department of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China.
Sun H; Department of Animal Science, School of Animal Science, Jilin University, Changchun, 130062, China.
Guo L; Department of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China.
Zhang Z; College of Animal Sciences, Zhejiang University, Hangzhou, 310058, Zhejiang, China. zhe_.
Wang Q; College of Animal Sciences, Zhejiang University, Hangzhou, 310058, Zhejiang, China. .
Pan Y; College of Animal Sciences, Zhejiang University, Hangzhou, 310058, Zhejiang, China. .
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Źródło :
Scientific reports [Sci Rep] 2022 Jul 25; Vol. 12 (1), pp. 12645. Date of Electronic Publication: 2022 Jul 25.
Typ publikacji :
Journal Article
MeSH Terms :
Breeding*
Genome-Wide Association Study*
Animals ; Genome ; Genotype ; Haplotypes/genetics ; Humans ; Polymorphism, Single Nucleotide ; Swine/genetics
Czasopismo naukowe
Tytuł :
Recommendations for clinical interpretation of variants found in non-coding regions of the genome.
Autorzy :
Ellingford JM; Division of Evolution, Infection and Genomic Sciences, School of Biological Sciences, Faculty of Biology, Medicines and Health, University of Manchester, Manchester, M13 9PT, UK. .; Manchester Centre for Genomic Medicine, St Mary's Hospital, Manchester University NHS Foundation Trust, Manchester, M13 9WL, UK. .; Genomics England, London, UK. .
Ahn JW; Cambridge Genomics Laboratory, Cambridge University Hospitals NHS Foundation Trust, Cambridge Biomedical Campus, Cambridge, UK.
Bagnall RD; Agnes Ginges Centre for Molecular Cardiology at Centenary Institute, University of Sydney, Sydney, Australia.
Baralle D; School of Human Development and Health, Faculty of Medicine, University of Southampton, Southampton, UK.; Wessex Clinical Genetics Service, University Hospital Southampton NHS Foundation Trust, Southampton, UK.
Barton S; Manchester Centre for Genomic Medicine, St Mary's Hospital, Manchester University NHS Foundation Trust, Manchester, M13 9WL, UK.
Campbell C; Manchester Centre for Genomic Medicine, St Mary's Hospital, Manchester University NHS Foundation Trust, Manchester, M13 9WL, UK.
Downes K; Cambridge Genomics Laboratory, Cambridge University Hospitals NHS Foundation Trust, Cambridge Biomedical Campus, Cambridge, UK.
Ellard S; Institute of Biomedical and Clinical Science, University of Exeter Medical School, Exeter, UK.; South West Genomic Laboratory Hub, Exeter Genomic Laboratory, Royal Devon and Exeter NHS Foundation Trust, Exeter, UK.
Duff-Farrier C; South West NHS Genomic Laboratory Hub, Bristol Genetics Laboratory, North Bristol NHS Trust, Bristol, UK.
FitzPatrick DR; MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Western General Hospital, Edinburgh, UK.
Greally JM; Department of Pediatrics, Division of Pediatric Genetic, Medicine, Children's Hospital at Montefiore/Montefiore Medical Center/Albert, Einstein College of Medicine, Bronx, NY, USA.
Ingles J; Centre for Population Genomics, Garvan Institute of Medical Research, and UNSW Sydney, Sydney, Australia.; Centre for Population Genomics, Murdoch Children's Research Institute, Melbourne, Australia.
Krishnan N; Centre for Population Genomics, Garvan Institute of Medical Research, and UNSW Sydney, Sydney, Australia.; Centre for Population Genomics, Murdoch Children's Research Institute, Melbourne, Australia.
Lord J; School of Human Development and Health, Faculty of Medicine, University of Southampton, Southampton, UK.
Martin HC; Human Genetics Programme, Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Newman WG; Division of Evolution, Infection and Genomic Sciences, School of Biological Sciences, Faculty of Biology, Medicines and Health, University of Manchester, Manchester, M13 9PT, UK.; Manchester Centre for Genomic Medicine, St Mary's Hospital, Manchester University NHS Foundation Trust, Manchester, M13 9WL, UK.
O'Donnell-Luria A; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Division of Genetics and Genomics, Boston Children's Hospital, Boston, MA, USA.; Analytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, MA, USA.
Ramsden SC; Manchester Centre for Genomic Medicine, St Mary's Hospital, Manchester University NHS Foundation Trust, Manchester, M13 9WL, UK.
Rehm HL; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Analytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, MA, USA.
Richardson E; Centre for Population Genomics, Garvan Institute of Medical Research, and UNSW Sydney, Sydney, Australia.; Centre for Population Genomics, Murdoch Children's Research Institute, Melbourne, Australia.
Singer-Berk M; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Taylor JC; National Institute for Health Research Oxford Biomedical Research Centre, Wellcome Centre for Human Genetics, University of Oxford, Oxford, OX3 7BN, UK.; Wellcome Centre for Human Genetics, University of Oxford, Oxford, OX3 7BN, UK.
Williams M; South West NHS Genomic Laboratory Hub, Bristol Genetics Laboratory, North Bristol NHS Trust, Bristol, UK.
Wood JC; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Wright CF; Institute of Biomedical and Clinical Science, University of Exeter Medical School, Exeter, UK.
Harrison SM; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Ambry Genetics, Aliso Viejo, CA, USA.
Whiffin N; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA. .; Wellcome Centre for Human Genetics, University of Oxford, Oxford, OX3 7BN, UK. .
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Źródło :
Genome medicine [Genome Med] 2022 Jul 19; Vol. 14 (1), pp. 73. Date of Electronic Publication: 2022 Jul 19.
Typ publikacji :
Letter
MeSH Terms :
Genetic Variation*
Genome-Wide Association Study*
Genome ; Open Reading Frames ; Regulatory Sequences, Nucleic Acid
Opinia redakcyjna
Tytuł :
A comprehensive benchmarking of WGS-based deletion structural variant callers.
Autorzy :
Sarwal V; Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA.; Indian Institute of Technology Delhi, Hauz Khas, New Delhi, Delhi 110016, India.
Niehus S; Berlin Institute of Health (BIH), Anna-Louisa-Karsch-Str. 2, 10178 Berlin, Germany.; Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Charitéplatz 1, 10117 Berlin, Germany.
Ayyala R; Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA.
Kim M; Department of Quantitative and Computational Biology, University of Southern California, 1050 Childs Way, Los Angeles, CA 90089.
Sarkar A; School of Computing and Electrical Engineering, Indian Institute of Technology Mandi, Kamand, Mandi, Himachal Pradesh 175001, India.
Chang S; Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA.
Lu A; Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA.
Rajkumar N; Department of Bioengineering, Department of Bioengineering, University of California Los Angeles, Los Angeles, CA, 90095.
Darfci-Maher N; Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA.
Littman R; Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA.
Chhugani K; Department of Clinical Pharmacy, School of Pharmacy, University of Southern California 1985 Zonal Avenue Los Angeles, CA 90089-9121.
Soylev A; Department of Computer Engineering, Konya Food and Agriculture University, Konya, Turkey.
Comarova Z; Department Civil and Environmental Engineering, University of Southern California, Los Angeles, CA, United States.
Wesel E; Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA.
Castellanos J; Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA.
Chikka R; Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA.
Distler MG; Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA.
Eskin E; Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA.; Department of Human Genetics, David Geffen School of Medicine at UCLA, 695 Charles E. Young Drive South, Box 708822, Los Angeles, CA, 90095, USA.; Department of Computational Medicine, David Geffen School of Medicine at UCLA, 73-235 CHS, Los Angeles, CA, 90095, USA.
Flint J; Center for Neurobehavioral Genetics, Semel Institute for Neuroscience and Human Behavior, University of California Los Angeles, 760 Westwood Plaza, Los Angeles, CA 90095, USA.
Mangul S; Department of Clinical Pharmacy, School of Pharmacy, University of Southern California 1985 Zonal Avenue Los Angeles, CA 90089-9121.
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Źródło :
Briefings in bioinformatics [Brief Bioinform] 2022 Jul 18; Vol. 23 (4).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural
MeSH Terms :
Benchmarking*
Genome, Human*
Animals ; High-Throughput Nucleotide Sequencing/methods ; Humans ; Mice ; Whole Genome Sequencing/methods
Czasopismo naukowe
Tytuł :
ELSSI: parallel SNP-SNP interactions detection by ensemble multi-type detectors.
Autorzy :
Wang X; School of Software, Shandong University, Jinan 250101, China.; Joint SDU-NTU Centre for Artificial Intelligence Research(C-FAIR), Shandong University, Jinan 250101, China.
Cao X; College of Computer and Information Sciences, Southwest University, Chongqing 400715, China.
Feng Y; College of Computer and Information Sciences, Southwest University, Chongqing 400715, China.
Guo M; School of Electrical and Information Engineering, Beijing University of Civil Engineering and Architecture, Beijing 100044, China.
Yu G; School of Software, Shandong University, Jinan 250101, China.
Wang J; Joint SDU-NTU Centre for Artificial Intelligence Research(C-FAIR), Shandong University, Jinan 250101, China.
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Źródło :
Briefings in bioinformatics [Brief Bioinform] 2022 Jul 18; Vol. 23 (4).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome-Wide Association Study*/methods
Polymorphism, Single Nucleotide*
Genome
Czasopismo naukowe
Tytuł :
Automated sequence-based annotation and interpretation of the human genome.
Autorzy :
Kundaje A; Department of Genetics, Stanford University, Palo Alto, CA, USA. .; Department of Computer Science, Stanford University, Palo Alto, CA, USA. .
Meuleman W; Altius Institute for Biomedical Sciences, Seattle, WA, USA. .; Paul G. Allen School of Computer Science & Engineering, University of Washington, Seattle, WA, USA. .
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Źródło :
Nature genetics [Nat Genet] 2022 Jul; Vol. 54 (7), pp. 916-917.
Typ publikacji :
Journal Article
MeSH Terms :
Databases, Genetic*
Genome, Human*/genetics
Genome, Bacterial ; Humans ; Molecular Sequence Annotation
Czasopismo naukowe

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