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Tytuł :
Machine learning: its challenges and opportunities in plant system biology.
Autorzy :
Hesami M; Department of Plant Agriculture, University of Guelph, Guelph, ON, N1G 2W1, Canada.
Alizadeh M; Department of Botany, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada.
Jones AMP; Department of Plant Agriculture, University of Guelph, Guelph, ON, N1G 2W1, Canada.
Torkamaneh D; Département de Phytologie, Université Laval, Québec City, QC, G1V 0A6, Canada. .; Institut de Biologie Intégrative Et Des Systèmes (IBIS), Université Laval, Québec City, QC, G1V 0A6, Canada. .
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Źródło :
Applied microbiology and biotechnology [Appl Microbiol Biotechnol] 2022 May; Vol. 106 (9-10), pp. 3507-3530. Date of Electronic Publication: 2022 May 16.
Typ publikacji :
Journal Article; Review
MeSH Terms :
Genomics*/methods
Systems Biology*/methods
Computational Biology/methods ; Machine Learning ; Metabolomics/methods ; Plants/genetics ; Proteomics/methods
Czasopismo naukowe
Tytuł :
PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology.
Autorzy :
Westbrook JD; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Cancer Institute of New Jersey, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, USA.
Young JY; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.
Shao C; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.
Feng Z; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.
Guranovic V; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.
Lawson CL; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.
Vallat B; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.
Adams PD; Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; Department of Bioengineering, University of California at Berkeley, Berkeley, CA 94720, USA.
Berrisford JM; Protein Data Bank in Europe, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Bricogne G; Global Phasing Ltd, Sheraton House, Castle Park, Cambridge CB3 0AK, UK.
Diederichs K; University of Konstanz, 78457 Konstanz, Germany.
Joosten RP; Department of Biochemistry, Netherlands Cancer Institute, Amsterdam, the Netherlands; Oncode Institute, 3521 AL Utrecht, the Netherlands. Electronic address: https://www.twitter.com/Robbie_Joosten.
Keller P; Global Phasing Ltd, Sheraton House, Castle Park, Cambridge CB3 0AK, UK.
Moriarty NW; Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Sobolev OV; Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Velankar S; Protein Data Bank in Europe, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Vonrhein C; Global Phasing Ltd, Sheraton House, Castle Park, Cambridge CB3 0AK, UK.
Waterman DG; UKRI-STFC Rutherford Appleton Laboratory, Didcot OX11 0FA, UK; CCP4, Research Complex at Harwell, Rutherford Appleton Laboratory, Didcot OX11 0FA, UK. Electronic address: https://www.twitter.com/upintheair.
Kurisu G; Protein Data Bank Japan, Institute for Protein Research, Osaka University, Suita, Osaka 565-0871, Japan.
Berman HM; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; The Bridge Institute, Michelson Center for Convergent Bioscience, University of Southern California, Los Angeles, CA, USA.
Burley SK; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Cancer Institute of New Jersey, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, USA; Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California, La Jolla, CA 92093, USA. Electronic address: .
Peisach E; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA. Electronic address: .
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Źródło :
Journal of molecular biology [J Mol Biol] 2022 Jun 15; Vol. 434 (11), pp. 167599. Date of Electronic Publication: 2022 Apr 20.
Typ publikacji :
Journal Article; Review
MeSH Terms :
Computational Biology*
Crystallography*
Databases, Protein*
Software*
Macromolecular Substances/chemistry ; Molecular Biology ; Protein Conformation ; Semantics
Czasopismo naukowe
Tytuł :
Toolboxes for plant systems biology research.
Autorzy :
Park J; School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Demirer GS; Department of Plant Biology and Genome Center, University of California Davis, Davis, CA 95616, USA; Department of Chemical Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Cheung LS; School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA 30332, USA. Electronic address: .
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Źródło :
Current opinion in biotechnology [Curr Opin Biotechnol] 2022 Jun; Vol. 75, pp. 102692. Date of Electronic Publication: 2022 Feb 07.
Typ publikacji :
Journal Article; Review; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't
MeSH Terms :
Plants*/genetics
Systems Biology*/methods
Gene Regulatory Networks ; Plant Development ; Synthetic Biology/methods
Czasopismo naukowe
Tytuł :
Developmental biology is poised to discover altogether new principles in biology in the 21st century.
Autorzy :
Sánchez Alvarado A; Stowers Institute for Medical Research, Howard Hughes Medical Institute, Kansas City, MO, United States. Electronic address: .
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Źródło :
Developmental biology [Dev Biol] 2022 Aug; Vol. 488, pp. 47-53. Date of Electronic Publication: 2022 May 14.
Typ publikacji :
Historical Article; Journal Article
MeSH Terms :
Biology*
Gene Editing*
Developmental Biology ; History, 21st Century
Czasopismo naukowe
Tytuł :
Tyto: A Python Tool Enabling Better Annotation Practices for Synthetic Biology Data-Sharing.
Autorzy :
Bartley BA; Raytheon BBN Technologies, Cambridge, Massachusetts 02138, United States.
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Źródło :
ACS synthetic biology [ACS Synth Biol] 2022 Mar 18; Vol. 11 (3), pp. 1373-1376. Date of Electronic Publication: 2022 Feb 28.
Typ publikacji :
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Software*
Synthetic Biology*
Computational Biology ; Databases, Factual ; Metadata
Czasopismo naukowe
Tytuł :
Preparation and Use of Cellular Reagents: A Low-resource Molecular Biology Reagent Platform.
Autorzy :
Bhadra S; Department of Molecular Biosciences, College of Natural Sciences, The University of Texas at Austin, Austin, Texas.; Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas.
Paik I; Department of Molecular Biosciences, College of Natural Sciences, The University of Texas at Austin, Austin, Texas.; Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas.
Torres JA; Freshman Research Initiative, DIY Diagnostics Stream, The University of Texas at Austin, Austin, Texas.; McGovern Medical School, University of Texas Health Science Center at Houston, Houston, Texas.
Fadanka S; Mboalab Biotech, Yaoundé, Cameroon.
Gandini C; Department of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, UK.; Nuclera Nucleics Ltd., Cambridge, UK.
Akligoh H; Hive Biolab, Kentinkrono, Kumasi, Ghana.
Molloy J; Department of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, UK.
Ellington AD; Department of Molecular Biosciences, College of Natural Sciences, The University of Texas at Austin, Austin, Texas.; Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas.
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Źródło :
Current protocols [Curr Protoc] 2022 Mar; Vol. 2 (3), pp. e387.
Typ publikacji :
Journal Article
MeSH Terms :
DNA*
Molecular Biology*
Indicators and Reagents ; Polymerase Chain Reaction ; Synthetic Biology
Czasopismo naukowe
Tytuł :
EXCESP: A Structure-Based Online Database for Extracellular Interactome of Cell Surface Proteins in Humans.
Autorzy :
Dhusia K; Department of Systems and Computational Biology, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, New York 10461, United States.
Madrid C; Department of Systems and Computational Biology, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, New York 10461, United States.; Laboratory for Macromolecular Analysis and Proteomics, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, New York 10461, United States.
Su Z; Department of Systems and Computational Biology, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, New York 10461, United States.
Wu Y; Department of Systems and Computational Biology, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, New York 10461, United States.
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Źródło :
Journal of proteome research [J Proteome Res] 2022 Feb 04; Vol. 21 (2), pp. 349-359. Date of Electronic Publication: 2022 Jan 03.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Membrane Proteins*/genetics
Systems Biology*
Computational Biology/methods ; Humans ; Protein Interaction Mapping/methods ; Signal Transduction
Czasopismo naukowe
Tytuł :
Elucidating multi-input processing 3-node gene regulatory network topologies capable of generating striped gene expression patterns.
Autorzy :
Arboleda-Rivera JC; Grupo de Fundamentos y Enseñanza de la Física y los Sistemas Dinámicos, Instituto de Biología, Facultad de Ciencias Exactas y Naturales, Universidad de Antioquia UdeA, Medellín, Colombia.
Machado-Rodríguez G; Grupo de Fundamentos y Enseñanza de la Física y los Sistemas Dinámicos, Instituto de Biología, Facultad de Ciencias Exactas y Naturales, Universidad de Antioquia UdeA, Medellín, Colombia.
Rodríguez BA; Grupo de Fundamentos y Enseñanza de la Física y los Sistemas Dinámicos, Instituto de Física, Facultad de Ciencias Exactas y Naturales, Universidad de Antioquia UdeA, Medellín, Colombia.
Gutiérrez J; Flanders Marine Institute (VLIZ), Oostende, Belgium.
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Źródło :
PLoS computational biology [PLoS Comput Biol] 2022 Feb 14; Vol. 18 (2), pp. e1009704. Date of Electronic Publication: 2022 Feb 14 (Print Publication: 2022).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Regulatory Networks*/genetics
Systems Biology*
Gene Expression ; Signal Transduction/genetics ; Synthetic Biology
Czasopismo naukowe
Tytuł :
BioNERO: an all-in-one R/Bioconductor package for comprehensive and easy biological network reconstruction.
Autorzy :
Almeida-Silva F; Laboratório de Química e Função de Proteínas e Peptídeos, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Av. Alberto Lamego 2000, P5, sala 217, Campos dos Goytacazes, RJ, Brazil. .
Venancio TM; Laboratório de Química e Função de Proteínas e Peptídeos, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Av. Alberto Lamego 2000, P5, sala 217, Campos dos Goytacazes, RJ, Brazil. .
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Źródło :
Functional & integrative genomics [Funct Integr Genomics] 2022 Feb; Vol. 22 (1), pp. 131-136. Date of Electronic Publication: 2021 Nov 17.
Typ publikacji :
Journal Article
MeSH Terms :
Computational Biology*
Software*
Systems Biology
Czasopismo naukowe
Tytuł :
Personal Dense Dynamic Data Clouds Connect Systems Biomedicine to Scientific Wellness.
Autorzy :
Omenn GS; Departments of Computational Medicine & Bioinformatics, Internal Medicine, Human Genetics, and School of Public Health, University of Michigan, Ann Arbor, MI, USA. .; Institute for Systems Biology, Seattle, WA, USA. .
Magis AT; Institute for Systems Biology, Seattle, WA, USA.
Price ND; Institute for Systems Biology, Seattle, WA, USA.; Onegevity, New York, New York, USA.
Hood L; Institute for Systems Biology, Seattle, WA, USA.; Providence Saint Joseph Healthcare System, Seattle, USA.
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Źródło :
Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2022; Vol. 2486, pp. 315-334.
Typ publikacji :
Journal Article
MeSH Terms :
Artificial Intelligence*
Systems Biology*
Computational Biology ; Genomics ; Proteomics
Czasopismo naukowe
Tytuł :
Metabolic systems biology and multi-omics of cyanobacteria: Perspectives and future directions.
Autorzy :
Pathania R; Systems Biology for Biofuels Group, International Centre for Genetic Engineering and Biotechnology, ICGEB Campus, Aruna Asaf Ali Marg, New Delhi 110067, India.
Srivastava A; Department of Chemistry, Purdue University, West Lafayette, IN 47907, United States.
Srivastava S; Systems Biology for Biofuels Group, International Centre for Genetic Engineering and Biotechnology, ICGEB Campus, Aruna Asaf Ali Marg, New Delhi 110067, India; DBT-ICGEB Center for Advanced Bioenergy Research, International Centre for Genetic Engineering and Biotechnology (ICGEB), New Delhi, India.
Shukla P; School of Biotechnology, Institute of Science, Banaras Hindu University, Varanasi 221005, Uttar Pradesh, India; Enzyme Technology and Protein Bioinformatics Laboratory, Department of Microbiology, Maharshi Dayanand University, Rohtak 124001, Haryana, India. Electronic address: .
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Źródło :
Bioresource technology [Bioresour Technol] 2022 Jan; Vol. 343, pp. 126007. Date of Electronic Publication: 2021 Sep 22.
Typ publikacji :
Journal Article; Review
MeSH Terms :
Cyanobacteria*/genetics
Systems Biology*
Metabolic Engineering ; Metabolomics ; Photosynthesis ; Synthetic Biology
Czasopismo naukowe
Tytuł :
Discovering adaptation-capable biological network structures using control-theoretic approaches.
Autorzy :
Bhattacharya P; Department of Chemical Engineering, Indian Institute of Technology (IIT) Madras, Chennai, India.; Robert Bosch Centre for Data Science and Artificial Intelligence (RBCDSAI), IIT Madras, Chennai, India.; Initiative for Biological Systems Engineering (IBSE), IIT Madras, Chennai, India.
Raman K; Robert Bosch Centre for Data Science and Artificial Intelligence (RBCDSAI), IIT Madras, Chennai, India.; Initiative for Biological Systems Engineering (IBSE), IIT Madras, Chennai, India.; Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, IIT Madras, Chennai, India.
Tangirala AK; Department of Chemical Engineering, Indian Institute of Technology (IIT) Madras, Chennai, India.; Robert Bosch Centre for Data Science and Artificial Intelligence (RBCDSAI), IIT Madras, Chennai, India.; Initiative for Biological Systems Engineering (IBSE), IIT Madras, Chennai, India.
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Źródło :
PLoS computational biology [PLoS Comput Biol] 2022 Jan 21; Vol. 18 (1), pp. e1009769. Date of Electronic Publication: 2022 Jan 21 (Print Publication: 2022).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Adaptation, Biological*/genetics
Adaptation, Biological*/physiology
Models, Biological*
Synthetic Biology*
Feedback, Physiological/*physiology
Computational Biology
Czasopismo naukowe
Tytuł :
The Systems and Synthetic Biology of Auxin.
Autorzy :
Wright RC; Department of Biological Systems Engineering, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, Virginia 24061, USA.
Moss BL; Department of Biology, Whitman College, Walla Walla, Washington 99362, USA.
Nemhauser JL; Department of Biology, University of Washington, Seattle, Washington 98195, USA.
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Źródło :
Cold Spring Harbor perspectives in biology [Cold Spring Harb Perspect Biol] 2022 Jan 04; Vol. 14 (1). Date of Electronic Publication: 2022 Jan 04.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Review
MeSH Terms :
Indoleacetic Acids*
Synthetic Biology*
Humans ; Systems Biology
Czasopismo naukowe
Tytuł :
Genomic and Synthetic Biology Digital Biosecurity.
Autorzy :
Hudson CM; Sandia National Laboratories, Albuquerque NM 87123, USA, .
Pattengale ND
Iyer RK
Kalbarczyk ZT
Alli N
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Źródło :
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing [Pac Symp Biocomput] 2022; Vol. 27, pp. 402-406.
Typ publikacji :
Journal Article
MeSH Terms :
Biosecurity*
Synthetic Biology*
Computational Biology ; Genomics ; Humans
Czasopismo naukowe
Tytuł :
Reconciling Signaling Pathway Databases with Network Topologies.
Autorzy :
Rubel T; Biology Department, Reed College, Portland, Oregon, USA.
Singh P
Ritz A
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Źródło :
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing [Pac Symp Biocomput] 2022; Vol. 27, pp. 211-222.
Typ publikacji :
Journal Article
MeSH Terms :
Computational Biology*
Signal Transduction*
Databases, Factual ; Humans ; Proteins ; Systems Biology
Czasopismo naukowe
Tytuł :
Systems biology and machine learning approaches identify drug targets in diabetic nephropathy.
Autorzy :
Abedi M; Regenerative Medicine Research Center, Isfahan University of Medical Sciences, Isfahan, Iran.
Marateb HR; Biomedical Engineering Department, Engineering Faculty, University of Isfahan, Isfahan, Iran.; Department of Automatic Control, Biomedical Engineering Research Center, Universitat Politècnica de Catalunya, BarcelonaTech (UPC), Barcelona, Spain.
Mohebian MR; Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, Canada.
Aghaee-Bakhtiari SH; Bioinformatics Research Group, Mashhad University of Medical Sciences, Mashhad, Iran.; Department of Medical Biotechnology and Nanotechnology, Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran.
Nassiri SM; Department of Clinical Pathology, Faculty of Veterinary Medicine, University of Tehran, Tehran, Iran.
Gheisari Y; Regenerative Medicine Research Center, Isfahan University of Medical Sciences, Isfahan, Iran. .; Department of Genetics and Molecular Biology, Isfahan University of Medical Sciences, Isfahan, Iran. .
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Źródło :
Scientific reports [Sci Rep] 2021 Dec 06; Vol. 11 (1), pp. 23452. Date of Electronic Publication: 2021 Dec 06.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Machine Learning*
Systems Biology*
Diabetic Nephropathies/*drug therapy
Algorithms ; Animals ; Chemistry, Pharmaceutical/methods ; Cluster Analysis ; Computational Biology/methods ; Drug Design ; Epigenesis, Genetic ; Gene Expression Profiling/methods ; Gene Regulatory Networks ; Global Health ; Humans ; Kidney Cortex/drug effects ; Kidney Medulla/drug effects ; Linear Models ; Male ; Mice ; Mice, Inbred DBA ; MicroRNAs/genetics ; Microarray Analysis ; Oligonucleotide Array Sequence Analysis ; Principal Component Analysis ; Regression Analysis ; Signal Transduction ; Support Vector Machine
Czasopismo naukowe
Tytuł :
Punnett Squares or Protein Production? The Expert-Novice Divide for Conceptions of Genes and Gene Expression.
Autorzy :
Newman DL; Thomas H. Gosnell School of Life Sciences, Rochester Institute of Technology, Rochester, NY 14623.
Coakley A; Department of Biological Sciences, San José State University, San José, CA 95192.; Department of Curriculum and Instruction and Department of Chemistry, University of Arkansas, Fayetteville, AR 72701.
Link A; Department of Curriculum and Instruction and Department of Chemistry, University of Arkansas, Fayetteville, AR 72701.
Mills K; Department of Curriculum and Instruction and Department of Chemistry, University of Arkansas, Fayetteville, AR 72701.; School of Arts and Sciences, Florida Southern College, Lakeland, FL 33801.
Wright LK; Thomas H. Gosnell School of Life Sciences, Rochester Institute of Technology, Rochester, NY 14623.
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Źródło :
CBE life sciences education [CBE Life Sci Educ] 2021 Dec; Vol. 20 (4), pp. ar53.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Molecular Biology*
Students*
Biology ; DNA ; Gene Expression ; Humans ; Problem Solving
Czasopismo naukowe
Tytuł :
Decoding and recoding plant development.
Autorzy :
Guiziou S; Department of Biology, University of Washington, Seattle, Washington 98195, USA.
Chu JC; Department of Biology, University of Washington, Seattle, Washington 98195, USA.
Nemhauser JL; Department of Biology, University of Washington, Seattle, Washington 98195, USA.
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Źródło :
Plant physiology [Plant Physiol] 2021 Oct 05; Vol. 187 (2), pp. 515-526.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Review
MeSH Terms :
Cell Differentiation*
Cell Lineage*
Gene Editing*
Synthetic Biology*
Systems Biology*
Plant Development/*physiology
CRISPR-Cas Systems/genetics ; Genetic Engineering ; Integrases/genetics ; Molecular Biology ; Plant Development/genetics
Czasopismo naukowe
Tytuł :
FiCoS: A fine-grained and coarse-grained GPU-powered deterministic simulator for biochemical networks.
Autorzy :
Tangherloni A; Department of Human and Social Sciences, University of Bergamo, Bergamo, Italy.
Nobile MS; Department of Industrial Engineering & Innovation Sciences, Eindhoven University of Technology, Eindhoven, The Netherlands.; SYSBIO/ISBE.IT Centre of Systems Biology, Milan, Italy.; Bicocca Bioinformatics Biostatistics and Bioimaging Centre (B4), University of Milano-Bicocca, Vedano al Lambro, Italy.
Cazzaniga P; Department of Human and Social Sciences, University of Bergamo, Bergamo, Italy.; SYSBIO/ISBE.IT Centre of Systems Biology, Milan, Italy.; Bicocca Bioinformatics Biostatistics and Bioimaging Centre (B4), University of Milano-Bicocca, Vedano al Lambro, Italy.
Capitoli G; Bicocca Bioinformatics Biostatistics and Bioimaging Centre (B4), University of Milano-Bicocca, Vedano al Lambro, Italy.; School of Medicine and Surgery, University of Milano-Bicocca, Monza, Italy.
Spolaor S; Bicocca Bioinformatics Biostatistics and Bioimaging Centre (B4), University of Milano-Bicocca, Vedano al Lambro, Italy.; Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milan, Italy.
Rundo L; Department of Radiology, University of Cambridge, Cambridge, United Kingdom.; Cancer Research UK Cambridge Centre, University of Cambridge, Cambridge, United Kingdom.
Mauri G; SYSBIO/ISBE.IT Centre of Systems Biology, Milan, Italy.; Bicocca Bioinformatics Biostatistics and Bioimaging Centre (B4), University of Milano-Bicocca, Vedano al Lambro, Italy.; Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milan, Italy.
Besozzi D; SYSBIO/ISBE.IT Centre of Systems Biology, Milan, Italy.; Bicocca Bioinformatics Biostatistics and Bioimaging Centre (B4), University of Milano-Bicocca, Vedano al Lambro, Italy.; Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milan, Italy.
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Źródło :
PLoS computational biology [PLoS Comput Biol] 2021 Sep 09; Vol. 17 (9), pp. e1009410. Date of Electronic Publication: 2021 Sep 09 (Print Publication: 2021).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Biochemical Phenomena*
Software*
Systems Biology*
Algorithms ; Autophagy ; Computational Biology ; Computer Graphics ; Computer Simulation ; Humans ; Mathematical Concepts ; Metabolic Networks and Pathways ; Models, Biological ; Protein Biosynthesis ; Synthetic Biology
Czasopismo naukowe

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